PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G183900.1
Common NameB456_003G183900, LOC105789369
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 516aa    MW: 56677.7 Da    PI: 4.4911
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G183900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.9e-36451362102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d++++ ++sws ++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+
  Gorai.003G183900.1  45 FLSKTYDMVDDPATDAIVSWSPSNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKH 126
                         9********************999*****************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i r+k 
  Gorai.003G183900.1 127 LLRNISRRKP 136
                         *******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-4041134IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-3641134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-6541134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-214568IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3245134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-218395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-2196108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MDGVSSSGNS QNDASTSGGE SQTTAQPQTA PKPVPVQSVN TPPPFLSKTY DMVDDPATDA  60
IVSWSPSNNS FVVWNPPEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF  120
LRGQKHLLRN ISRRKPAHGH GHQQTQQSHG QSSSVDACVE VGKFGLEEEV ERLKRDKNVL  180
MQELVRLRQQ QQATDNQLQV MVQRLQGMEQ RQQQMMSFLA KAMQSPGFLA QFVQQQNESN  240
RRISEANKKR RLKQDGNDTS AASDGQIIKY QPLNEAKEML RQIMKGDSSP RLDSFNNNHE  300
NFLIGDDASA SSGLDGGNSA SRVSGVTLKE VPPTSGCSTY VPATSWIPGH SPSAAISEIQ  360
PSPCTTSSEE ITTSRFPDMS ALVGAQKPAA MSIPQTDISM PEVSEMPEMV QESIVDMPAE  420
NYVESETGNG GFIDPSTLVV NGSIPLQLDD LPDIDAFWED LLVPSPGPED IESTPMDSKG  480
EGNEGQPMDK GWDESQYMDN LTEQMGLLGS DNNRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-294313418120Heat shock factor protein 1
5d5u_B2e-294313427129Heat shock factor protein 1
5d5v_B2e-294313427129Heat shock factor protein 1
5d5v_D2e-294313427129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246253NKKRRLKQ
2247252KKRRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7024490.0KJ702449.1 Gossypium hirsutum heat shock transcription factor (HSF7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472188.10.0PREDICTED: heat shock factor protein HSF8-like
SwissprotQ401521e-175HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A0D2RPT80.0A0A0D2RPT8_G
STRINGPOPTR_0003s09370.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64702440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-141heat shock transcription factor A1D
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]